PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28257
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 381aa    MW: 41304.9 Da    PI: 8.0625
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28257genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.66.9e-42171773128
       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......................... 77 
               pGfrFhPt+eel+ +yL + + gkkl++ ++i +++iy+++PwdLp ++k +e+ewyfF++rd+k+ t   + r                           
  EMT28257  17 PGFRFHPTEEELLGFYLSRVALGKKLHF-DIIGTLNIYRHDPWDLPGMAKIGEREWYFFVPRDRKAGTAPPSARGstptssppstftatipgiclrrvatg 116
               9*************************99.99***************888999**************99888888458999********************* PP

       NAM  78 ........tksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       t++g+Wkatg+d+++ s+   ++++glkktLvfy+grap+g+ktdWvm+eyrl
  EMT28257 117 sggartgtTERGFWKATGSDRAIRSTgdPKRVIGLKKTLVFYQGRAPRGTKTDWVMNEYRL 177
               *******999***************8766778***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-241287IPR003441NAC domain
PROSITE profilePS5100546.36915197IPR003441NAC domain
PfamPF023654.9E-2117177IPR003441NAC domain
SuperFamilySSF1019413.66E-25109197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAMAVAASTM EVDQDLPGFR FHPTEEELLG FYLSRVALGK KLHFDIIGTL NIYRHDPWDL  60
PGMAKIGERE WYFFVPRDRK AGTAPPSARG STPTSSPPST FTATIPGICL RRVATGSGGA  120
RTGTTERGFW KATGSDRAIR STGDPKRVIG LKKTLVFYQG RAPRGTKTDW VMNEYRLPDT  180
GAAPPSEDTV LCKVYRKATP LKELEQRAFE MEEMKQRPGG NGGAARACPV PAAGDFYLSS  240
SDDVQDNFLI PSSSSSSVAL SGNSSSCDAP RVAKKEADIA TVAVASTSSL PHAANAPFRL  300
QLPAVNPPCG LQLPAANHEM PNMCSLQLPA ASQGVLDLPL QLPAATNHGV FDWLQDPFLT  360
QLRSPWQDQH CLSPYAHLLY Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-391719919167NO APICAL MERISTEM PROTEIN
1ut4_B3e-391719919167NO APICAL MERISTEM PROTEIN
1ut7_A3e-391719919167NO APICAL MERISTEM PROTEIN
1ut7_B3e-391719919167NO APICAL MERISTEM PROTEIN
3swm_A4e-391719922170NAC domain-containing protein 19
3swm_B4e-391719922170NAC domain-containing protein 19
3swm_C4e-391719922170NAC domain-containing protein 19
3swm_D4e-391719922170NAC domain-containing protein 19
3swp_A4e-391719922170NAC domain-containing protein 19
3swp_B4e-391719922170NAC domain-containing protein 19
3swp_C4e-391719922170NAC domain-containing protein 19
3swp_D4e-391719922170NAC domain-containing protein 19
4dul_A3e-391719919167NAC domain-containing protein 19
4dul_B3e-391719919167NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3673761e-141AK367376.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2055P15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690518.11e-151PREDICTED: NAC domain-containing protein 67 isoform X2
TrEMBLM8CLK00.0M8CLK0_AEGTA; Putative NAC domain-containing protein 94
STRINGMLOC_65456.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP177038105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.19e-70NAC domain containing protein 36